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30 lines
1.4 KiB
Markdown
30 lines
1.4 KiB
Markdown
---
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layout: default
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title: data
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description: Data
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---
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# data vignette: how to use cellxgene prepare
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#### coming soon!
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# example datasets to use with cellxgene
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### Examination of single cells from primary human pancreas tissue
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cells: 2,544
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tissue(s): pancreas
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data: [Human Cell Atlas Data Portal](https://prod.data.humancellatlas.org/explore/projects?filter=%5B%7B%22facetName%22%3A%22organ%22%2C%22terms%22%3A%5B%22pancreas%22%5D%7D%2C%7B%22facetName%22%3A%22project%22%2C%22terms%22%3A%5B%22Single+cell+transcriptome+analysis+of+human+pancreas%22%5D%7D%5D)
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paper: [Enge, Martin, et al.](https://www.cell.com/cell/fulltext/S0092-8674(17)31053-X?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS009286741731053X%3Fshowall%3Dtrue)
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### Tabula Muris
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cells: 53,800
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tissue(s): muscle, pancreas, bone, large intestine, heart, brain, fat, mammary gland, tongue , diaphragm, bladder, spleen, thymus, lung , skin, liver, trachea, kidney
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data: [Tabula Muris Data](https://github.com/czbiohub/tabula-muris-vignettes/tree/master/data)
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paper: [Tabula Muris Consortium](https://www.nature.com/articles/s41586-018-0590-4)
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### Transcriptional profiling of 1.3 million brain cells
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cells: 1,330,000
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tissue(s): brain
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data: [10x Genomics](https://community.10xgenomics.com/t5/10x-Blog/Our-1-3-million-single-cell-dataset-is-ready-to-download/ba-p/276)
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