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80f6137528
* add function to retrieve latest annotation from db, db updates * dont create directory in s3
61 lines
2.7 KiB
Python
61 lines
2.7 KiB
Python
import unittest
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from server.db.cellxgene_orm import CellxGeneUser, CellxGeneDataset, Annotation
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from server.db.db_utils import DbUtils
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from server.test.fixtures.database import TestDatabase
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class DatabaseTest(unittest.TestCase):
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db = DbUtils("postgresql://postgres:test_pw@localhost:5432")
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@classmethod
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def setUpClass(cls) -> None:
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TestDatabase()
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@classmethod
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def tearDownClass(cls) -> None:
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del cls.db
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def test_user_creation(self):
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one_user = self.db.get(table=CellxGeneUser, entity_id='test_user_id')
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self.assertEqual(one_user.id, 'test_user_id')
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user_count = self.db.session.query(CellxGeneUser).count()
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self.assertGreater(user_count, 10)
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def test_dataset_creation(self):
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one_dataset = self.db.query(table_args=[CellxGeneDataset],
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filter_args=[CellxGeneDataset.name == 'test_dataset'])
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self.assertEqual(one_dataset[0].name, 'test_dataset')
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dataset_count = self.db.session.query(CellxGeneDataset).count()
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self.assertGreater(dataset_count, 10)
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def test_annotation_creation(self):
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one_annotation = self.db.query(table_args=[Annotation], filter_args=[Annotation.tiledb_uri == 'tiledb_uri'])[0]
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self.assertEqual(one_annotation.tiledb_uri, 'tiledb_uri')
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annotation_count = self.db.session.query(Annotation).count()
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self.assertGreater(annotation_count, 10)
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def test_get_most_recent_annotation_for_user_dataset(self):
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dataset_id = str(self.db.query(table_args=[CellxGeneDataset],
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filter_args=[CellxGeneDataset.name == 'test_dataset'])[0].id)
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# have to commit separately because created_at time written on the db server
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_0'))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_1'))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_2'))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_3'))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_4'))
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self.db.session.commit()
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most_recent_annotation = self.db.query_for_most_recent(Annotation, [Annotation.dataset_id == dataset_id,
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Annotation.user_id == 'test_user_id'])
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self.assertEqual(most_recent_annotation.tiledb_uri, 'tiledb_uri_4')
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