Bruce Martin 141f802824 differential expression improvements (#452) ...

* add cutoff for low expression genes in topN selection

* remove debugging printfs

* change cli param name for diffexp cutoff

* change CLI param name

* second try at diffexp - using lfc sort with pval cutoff

* use lfc cutoff

* update comments to match code; cap p-value adjustment to max of 1

* lint

* explain diffexp in readme

* add link

* add diffexp-lfc-cutoff to test config

* update test to match revised diffexp spec

* fix latent bug in GET arg handling that was breaking tests

* lint

* comment cleanup

* fix variance overestimation so it is symmetric

* lint

2018-11-16 14:44:56 -08:00

..

schema.json

add --obs-names and --var-names CLI params (#371)

2018-10-30 14:07:38 -07:00

test_api.py

diffexp performance & UX improvements (#431)

2018-11-14 12:51:24 -08:00

test_filter.py

Restv2 feature branch merge to master (#284)

2018-10-01 14:58:46 -07:00

test_scanpy_engine.py

differential expression improvements (#452)

2018-11-16 14:44:56 -08:00