mirror of
https://github.com/chanzuckerberg/cellxgene.git
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45 lines
803 B
Markdown
45 lines
803 B
Markdown
# cellxgene
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A React + Redux web application for exploring large scale single cell RNA sequence data.
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### Requirements
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- OS: OSX, Windows, Linux
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- python 3.6
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- npm
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- Google Chrome
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## Installation
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#### clone project
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git clone https://github.com/chanzuckerberg/cellxgene.git
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#### install client
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cd cellxgene
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./bin/build-client
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#### To use with virtual env for python (optional, but recommended)
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ENV_NAME=cellxgene
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python3 -m venv ${ENV_NAME}
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source ${ENV_NAME}/bin/activate
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#### install server
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python3 setup.py install
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#### commandline help
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cellxgene --help
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# For help with the scanpy engine
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cellxgene scanpy --help
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#### run (with demo data)
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cellxgene --title PBMC3K scanpy example-dataset/
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*Thanks to Alex Wolf his help with test data*
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