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Charlotte Weaver 59022d7a9c Merge pull request #117 from chanzuckerberg/csweaver/tests

Csweaver/tests

2018-07-17 13:29:48 -07:00

__tests__/util

more Jest tests for TypedCrossfilter

2018-05-30 10:35:49 -07:00

bin

flake8/lint cleanup

2018-07-12 11:52:24 -07:00

client

Merge branch 'master' into webgl-pause

2018-07-16 11:10:51 -07:00

example-dataset

Add example dataset

2018-07-06 16:03:24 -07:00

server

use unittest assert methods instead of assert

2018-07-17 11:01:38 -07:00

.gitignore

Add client build script

2018-07-06 15:59:20 -07:00

LICENSE.txt

initial commit

2017-08-23 16:28:01 -07:00

MANIFEST.in

Initial packaging working

2018-07-16 11:48:53 -07:00

README.md

Updated readme for python packaged version

2018-07-16 14:20:50 -07:00

setup.py

Added entry point to run cellxgene from console

2018-07-10 12:56:42 -07:00

README.md

cellxgene

A React + Redux web application for exploring large scale single cell RNA sequence data.

Requirements

OS: OSX, Windows, Linux
python 3.6
npm
Google Chrome

Installation

clone project

git clone https://github.com/chanzuckerberg/cellxgene.git

install client

cd cellxgene
./bin/build-client

To use with virtual env for python (optional, but recommended)

python3 -m venv <env name>
source <env name>/bin/activate

install server

python setup.py install

run (with demo data)

cellxgene

Thanks to Alex Wolf his help with test data

Languages

JavaScript 68.4%

Python 30.1%

Makefile 0.7%

HTML 0.4%

CSS 0.2%