mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-16 13:27:59 +08:00
80f6137528
* add function to retrieve latest annotation from db, db updates * dont create directory in s3
61 lines
2.7 KiB
Python
61 lines
2.7 KiB
Python
import unittest
|
|
from server.db.cellxgene_orm import CellxGeneUser, CellxGeneDataset, Annotation
|
|
from server.db.db_utils import DbUtils
|
|
from server.test.fixtures.database import TestDatabase
|
|
|
|
|
|
class DatabaseTest(unittest.TestCase):
|
|
db = DbUtils("postgresql://postgres:test_pw@localhost:5432")
|
|
|
|
@classmethod
|
|
def setUpClass(cls) -> None:
|
|
TestDatabase()
|
|
|
|
@classmethod
|
|
def tearDownClass(cls) -> None:
|
|
del cls.db
|
|
|
|
def test_user_creation(self):
|
|
one_user = self.db.get(table=CellxGeneUser, entity_id='test_user_id')
|
|
self.assertEqual(one_user.id, 'test_user_id')
|
|
user_count = self.db.session.query(CellxGeneUser).count()
|
|
self.assertGreater(user_count, 10)
|
|
|
|
def test_dataset_creation(self):
|
|
one_dataset = self.db.query(table_args=[CellxGeneDataset],
|
|
filter_args=[CellxGeneDataset.name == 'test_dataset'])
|
|
self.assertEqual(one_dataset[0].name, 'test_dataset')
|
|
dataset_count = self.db.session.query(CellxGeneDataset).count()
|
|
self.assertGreater(dataset_count, 10)
|
|
|
|
def test_annotation_creation(self):
|
|
one_annotation = self.db.query(table_args=[Annotation], filter_args=[Annotation.tiledb_uri == 'tiledb_uri'])[0]
|
|
self.assertEqual(one_annotation.tiledb_uri, 'tiledb_uri')
|
|
annotation_count = self.db.session.query(Annotation).count()
|
|
self.assertGreater(annotation_count, 10)
|
|
|
|
def test_get_most_recent_annotation_for_user_dataset(self):
|
|
dataset_id = str(self.db.query(table_args=[CellxGeneDataset],
|
|
filter_args=[CellxGeneDataset.name == 'test_dataset'])[0].id)
|
|
|
|
# have to commit separately because created_at time written on the db server
|
|
self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_0'))
|
|
self.db.session.commit()
|
|
|
|
self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_1'))
|
|
self.db.session.commit()
|
|
|
|
self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_2'))
|
|
self.db.session.commit()
|
|
|
|
self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_3'))
|
|
self.db.session.commit()
|
|
|
|
self.db.session.add(Annotation(dataset_id=dataset_id, user_id='test_user_id', tiledb_uri='tiledb_uri_4'))
|
|
self.db.session.commit()
|
|
|
|
most_recent_annotation = self.db.query_for_most_recent(Annotation, [Annotation.dataset_id == dataset_id,
|
|
Annotation.user_id == 'test_user_id'])
|
|
|
|
self.assertEqual(most_recent_annotation.tiledb_uri, 'tiledb_uri_4')
|