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cellxgene is an interactive data explorer for single-cell transcriptomics data. Whether you need to visualize one thousand cells or one million, cellxgene helps you gain insight into your single-cell data.
features
Flexible selections, coloring, and differential expression of your selected sets of cells
Single-gene analyses (e.g. expression analysis)
getting started
cellxgene requires Python 3.6
Install the package.
pip install cellxgene
Download an example anndata file
curl -o pbmc3k.h5ad https://raw.githubusercontent.com/chanzuckerberg/cellxgene/master/example-dataset/pbmc3k.h5ad
Launch cellxgene
cellxgene launch pbmc3k.h5ad
getting help
We'd love to hear from you!
For questions, suggestions, or accolades, join the #cellxgene-users channel on the CZI Science Slack and say "hi!".
For any errors, report bugs on Github.