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https://github.com/chanzuckerberg/cellxgene.git
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GenevieveHaliburton
05a5a945bb
* add to faq, clean up titles * h4 headings for readibility * Ordering, add section on errors
38 lines
1.1 KiB
Markdown
38 lines
1.1 KiB
Markdown
_cellxgene_ is an interactive data explorer for single-cell transcriptomics data. Whether you need to visualize one thousand cells or one million, _cellxgene_ helps you gain insight into your single-cell data.
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## features
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#### Flexible selections, coloring, and differential expression of your selected sets of cells
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<img src="diffexp.gif" width="600"/>
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#### Single-gene analyses (e.g. expression analysis)
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<img src="customGene.gif" width="600" />
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## getting started
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_cellxgene_ requires **Python 3.6**
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Install the package.
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``` bash
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pip install cellxgene
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```
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Download an example [anndata](https://anndata.readthedocs.io/en/latest/) file
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``` bash
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curl -o pbmc3k.h5ad https://raw.githubusercontent.com/chanzuckerberg/cellxgene/master/example-dataset/pbmc3k.h5ad
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```
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Launch _cellxgene_
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``` bash
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cellxgene launch pbmc3k.h5ad
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```
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## getting help
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We'd love to hear from you!
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For questions, suggestions, or accolades, [join the `#cellxgene-users` channel on the CZI Science Slack](https://join-cziscience-slack.herokuapp.com/) and say "hi!".
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For any errors, [report bugs on Github](https://github.com/chanzuckerberg/cellxgene/issues).
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