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34 lines
921 B
Markdown
34 lines
921 B
Markdown
_cellxgene_ is an interactive data explorer for single-cell transcriptomics data designed to handle large datasets (1 million cells or more) and integrate with your favorite analysis tools
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## features
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- Flexible selection and coloring of cells
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- Differential expression of arbitrary sets of cells
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- Single-gene analyses
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## getting started
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Install the package
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``` bash
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pip install cellxgene
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```
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Download an example file
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``` bash
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curl -o pbmc3k.h5ad https://raw.githubusercontent.com/chanzuckerberg/cellxgene/master/example-dataset/pbmc3k.h5ad
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```
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Launch _cellxgene_
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``` bash
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cellxgene launch pbmc3k.h5ad
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```
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## getting help
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We'd love to hear from you!
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For questions, suggestions, or accolades, [join the `#cellxgene-users` channel on the CZI Science Slack](https://join-cziscience-slack.herokuapp.com/) and say "hi!".
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For any errors, [report bugs on Github](https://github.com/chanzuckerberg/cellxgene/issues).
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