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51 lines
1.7 KiB
Markdown
51 lines
1.7 KiB
Markdown
---
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layout: default
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title: demo-data
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description: Demo datasets
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---
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# Example datasets
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**To use these datasets, run:**
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`cellxgene launch [filename.h5ad] --open`
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### Peripheral blood mononuclear cells
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Healthy human PBMCs (10X).
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- Source: [10X genomics](https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k)
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- Cells: 2,638
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- File size: 19MB
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- [Raw data](http://cf.10xgenomics.com/samples/cell-exp/1.1.0/pbmc3k/pbmc3k_filtered_gene_bc_matrices.tar.gz)
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- [Processing](https://github.com/chanzuckerberg/cellxgene-vignettes/blob/master/dataset-processing/pbmc3k-processing.ipynb)
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- Launch:
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```
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cellxgene launch https://cellxgene-example-data.czi.technology/pbmc3k.h5ad
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```
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### Tabula muris
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20 organs and tissues from healthy mice (Smart-Seq2).
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Rich metadata and annotations.
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- Source: [bioRxiv, CZBiohub](https://www.biorxiv.org/content/10.1101/237446v2)
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- Cells: 45,423
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- File size: 174MB
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- [Raw data](https://figshare.com/projects/Tabula_Muris_Transcriptomic_characterization_of_20_organs_and_tissues_from_Mus_musculus_at_single_cell_resolution/27733)
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- [Processing](https://github.com/chanzuckerberg/cellxgene-vignettes/blob/master/dataset-processing/tabula-muris-processing.ipynb)
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- Launch:
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```
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cellxgene launch https://cellxgene-example-data.czi.technology/tabula-muris.h5ad
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```
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### Tabula muris senis
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22 organs and tissues from healthy mice at ages 3mo, 18mo, 21mo, and 24mo (Smart-Seq2).
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Rich metadata and annotations.
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- Source: [bioRxiv, CZBiohub](https://www.biorxiv.org/content/10.1101/661728v1)
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- Cells: 81,478
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- File size: 3.9GB
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- Raw data [geo link coming soon!]
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- [Processing](https://www.biorxiv.org/content/10.1101/661728v1)
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- Launch:
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```
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cellxgene launch https://cellxgene-example-data.czi.technology/tabula-muris-senis.h5ad
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```
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