mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-29 09:58:11 +08:00
36 lines
1.0 KiB
Markdown
36 lines
1.0 KiB
Markdown
_cellxgene_ is an interactive data explorer for single-cell transcriptomics data. Whether you need to visualize one thousand cells or one million, _cellxgene_ helps you gain insight into your single-cell data.
|
|
|
|
## features
|
|
|
|
- Flexible selection and coloring of cells
|
|
- Differential expression of arbitrary sets of cells
|
|
- Single-gene analyses
|
|
|
|
## getting started
|
|
|
|
_cellxgene_ requires **Python 3.6**
|
|
|
|
Install the package.
|
|
``` bash
|
|
pip install cellxgene
|
|
```
|
|
|
|
Download an example [anndata](https://anndata.readthedocs.io/en/latest/) file
|
|
|
|
``` bash
|
|
curl -o pbmc3k.h5ad https://raw.githubusercontent.com/chanzuckerberg/cellxgene/master/example-dataset/pbmc3k.h5ad
|
|
```
|
|
|
|
Launch _cellxgene_
|
|
``` bash
|
|
cellxgene launch pbmc3k.h5ad
|
|
```
|
|
|
|
## getting help
|
|
|
|
We'd love to hear from you!
|
|
|
|
For questions, suggestions, or accolades, [join the `#cellxgene-users` channel on the CZI Science Slack](https://join-cziscience-slack.herokuapp.com/) and say "hi!".
|
|
|
|
For any errors, [report bugs on Github](https://github.com/chanzuckerberg/cellxgene/issues).
|