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explain -M in the manpage
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@@ -182,6 +182,11 @@ Maximum fragment length (aka insert size; effective with
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.BR -xsr / --frag)
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[800]
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.TP
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.BI -M \ FLOAT
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Mark as secondary a chain that overlaps with a better chain by
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.I FLOAT
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or more of the shorter chain [0.5]
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.TP
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.BI --max-chain-skip \ INT
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A heuristics that stops chaining early [50]. Minimap2 uses dynamic programming
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for chaining. The time complexity is quadratic in the number of seeds. This
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