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output the original score

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Heng Li
2017-06-23 22:56:50 -04:00
parent 2987be288c
commit 0c274280ae
1 changed files with 2 additions and 1 deletions
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map.c
+2 -1
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@@ -385,7 +385,8 @@ static void *worker_pipeline(void *shared, int step, void *in)
if (r->p) printf("\t%d\t%d\t255", r->p->blen - r->p->n_ambi - r->p->n_diff, r->p->blen);
else printf("\t%d\t%d\t255", r->score, r->re - r->rs > r->qe - r->qs? r->re - r->rs : r->qe - r->qs);
printf("\tcm:i:%d", r->cnt);
if (r->parent == j) printf("\tss:i:%d", r->subsc);
if (r->p) printf("\ts1:i:%d", r->score);
if (r->parent == j) printf("\ts2:i:%d", r->subsc);
if (r->p) {
uint32_t k;
printf("\tNM:i:%d\tAS:i:%d\tnn:i:%d\tcg:Z:", r->p->n_diff, r->p->score, r->p->n_ambi);