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Release minimap2-2.31 (r1302)

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Heng Li
2026-05-19 18:39:04 -04:00
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NEWS.md
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Release 2.31-r1302 (19 May 2026)
--------------------------------
Notable changes to minimap2:
* Bugfix: supplementary and secondary alignments were occasionally flagged
incorrectly.
* Bugfix: Smith-Waterman alignment for inversion alignment led to an
out-of-bound access in rare cases.
Changes to paftools.js:
* New feature: new `sim2bed` subcommand to get a BED file from simulated
reads.
* New feature: new `badread2fa` subcommand to format reads simulated by
the Badread simulator.
Change to the python binding:
* New feature: mappy optionally writes the `ds` tag.
* Bugfix: a use-after-free error (#1345)
The two bugs in minimap2 had existed for years. They were caught by Jeremy Wang
at UNC when he ported minimap2 to Rust. Due to the two bug fixes, this version
occasionally produces alignment different from the last version.
(2.31: 19 May 2026, r1302)
Release 2.30-r1287 (15 June 2025)
---------------------------------