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removed duplicate check in sim2bed

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Heng Li
2026-04-25 00:35:59 -04:00
parent e5066c7976
commit d8371a403b
1 changed files with 0 additions and 3 deletions
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3
misc/paftools.js
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@@ -2357,7 +2357,6 @@ function paf_sim2bed(args)
}
var buf = new Bytes();
var file = new File(args[0]);
var seen = {};
while (file.readline(buf) >= 0) {
var line = buf.toString();
var t = line.split("!");
@@ -2378,8 +2377,6 @@ function paf_sim2bed(args)
strand = t[4];
}
if (st > en) { var tmp = st; st = en; en = tmp; }
if (seen[line]) continue;
seen[line] = 1;
print([chr, st, en, line, 0, strand].join("\t"));
}
file.close();