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Merge remote-tracking branch 'origin/master'

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Heng Li
2021-05-23 13:08:52 -04:00
parent 2a3793bbd2 10502e2a78
commit 5d7d25e92d
2 changed files with 2 additions and 2 deletions
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2
README.md
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@@ -275,7 +275,7 @@ CGATCGATAAATAGAGTAG---GAATAGCA
CGATCG---AATAGAGTAGGTCGAATtGCA
```
is represented as `:6-ata:10+gtc:4*at:3`, where `:[0-9]+` represents an
identical block, `-ata` represents a deltion, `+gtc` an insertion and `*at`
identical block, `-ata` represents a deletion, `+gtc` an insertion and `*at`
indicates reference base `a` is substituted with a query base `t`. It is
similar to the `MD` SAM tag but is standalone and easier to parse.

2
python/README.rst
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@@ -144,7 +144,7 @@ properties:
* **mlen**: length of the matching bases in the alignment, excluding ambiguous
base matches.
* **NM**: number of mismatches, gaps and ambiguous poistions in the alignment
* **NM**: number of mismatches, gaps and ambiguous positions in the alignment
* **trans_strand**: transcript strand. +1 if on the forward strand; -1 if on the
reverse strand; 0 if unknown