fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-09-15 13:07:55 +08:00
Code Issues Packages Projects Releases Wiki Activity

Mention in man page that CIGAR strings in SA tags are approximate (#1213)

Browse Source 
* Mention approx CIGAR strings in man page #724

* Fix FAQ typo
This commit is contained in:
Marcus Fedarko
2024-05-22 12:58:33 -07:00
committed by GitHub
parent 0cc3cdca27
commit 69e3629916
2 changed files with 2 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
FAQ.md
View File

@@ -2,7 +2,7 @@
Without `-a`, `-c` or `--cs`, minimap2 only finds *approximate* mapping
locations without detailed base alignment. In particular, the start and end
positions of the alignment are impricise. With one of those options, minimap2
positions of the alignment are imprecise. With one of those options, minimap2
will perform base alignment, which is generally more accurate but is much
slower.

2
minimap2.1
View File

@@ -742,7 +742,7 @@ s2 i Chaining score of the best secondary chain
NM i Total number of mismatches and gaps in the alignment
MD Z To generate the ref sequence in the alignment
AS i DP alignment score
SA Z List of other supplementary alignments
SA Z List of other supplementary alignments (with approximate CIGAR strings)
ms i DP score of the max scoring segment in the alignment
nn i Number of ambiguous bases in the alignment
ts A Transcript strand (splice mode only)