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dp chaining mostly works, but fails sometimes

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which means there are bugs that need to be fixed
This commit is contained in:
Heng Li
2017-06-06 14:19:50 -04:00
parent 1a9fc04cf0
commit 6d4348db44
6 changed files with 60 additions and 25 deletions
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mmpriv.h
+1 -1
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@@ -14,7 +14,7 @@ void radix_sort_128x(mm128_t *beg, mm128_t *end);
void radix_sort_64(uint64_t *beg, uint64_t *end);
uint32_t ks_ksmall_uint32_t(size_t n, uint32_t arr[], size_t kk);
int mm_chain_dp(int match_len, int max_dist, int bw, int max_skip, int min_sc, int n, mm128_t *a, uint64_t **_u, int32_t **_v, void *km);
int mm_chain_dp(int match_len, int max_dist, int bw, int max_skip, int min_sc, int n, mm128_t *a, uint64_t **_u, void *km);
#ifdef __cplusplus
}