document --secondary-seq in manpage

Resolve #1122
2026-09-15 13:07:55 +08:00 · 2023-10-24 09:52:39 -04:00
parent ace990c381
commit 98a3aa1b39
1 changed files with 3 additions and 0 deletions
--- a/minimap2.1
+++ b/minimap2.1
@@ -506,6 +506,9 @@ Output =/X CIGAR operators for sequence match/mismatch.
 .B -Y
 In SAM output, use soft clipping for supplementary alignments.
 .TP
+.B --secondary-seq
+In SAM output, show query sequences for secondary alignments.
+.TP
 .BI --seed \ INT
 Integer seed for randomizing equally best hits. Minimap2 hashes
 .I INT