r1149: implemented random open syncmer

On the mm2-update dataset, -j8 leads to sparser k-mer selection at higher accuracy. The speed becomes a little slower. There seems a benefit but not a big one.
2026-09-28 11:48:12 +08:00 · 2022-10-21 19:07:28 -04:00
parent cefd0d9f6c
commit c2f07ff2ac
9 changed files with 84 additions and 8 deletions
@@ -44,6 +44,7 @@
 #define MM_I_HPC          0x1
 #define MM_I_NO_SEQ       0x2
 #define MM_I_NO_NAME      0x4
+#define MM_I_SYNCMER      0x8

 #define MM_IDX_MAGIC   "MMI\2"