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removed -b0 (a typo)
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@@ -588,7 +588,7 @@ Up to 20% sequence divergence.
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.B splice
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Long-read spliced alignment
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.RB ( -k15
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.B -w5 --splice -g2k -G200k -A1 -B2 -O2,32 -E1,0 -b0 -C9 -z200 -ub --junc-bonus=9 --cap-sw-mem=0
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.B -w5 --splice -g2k -G200k -A1 -B2 -O2,32 -E1,0 -C9 -z200 -ub --junc-bonus=9 --cap-sw-mem=0
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.BR --splice-flank=yes ).
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In the splice mode, 1) long deletions are taken as introns and represented as
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the
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