r92: fixed a bug for overlapping alignment

On the PBcR example E. coli reads, miniasm gives one circular unitig.
2026-09-25 13:28:11 +08:00 · 2017-06-27 22:03:31 -04:00
parent 51057ab673
commit cdc2a1e29f
3 changed files with 6 additions and 3 deletions
@@ -281,6 +281,7 @@ mm_reg1_t *mm_map_frag(const mm_mapopt_t *opt, const mm_idx_t *mi, mm_tbuf_t *b,
 			}
 		}
 	}
+	n_a = j;
 	radix_sort_128x(a, a + n_a);
 	for (i = 0; i < n; ++i)
 		if (m[i].is_alloc) kfree(b->km, m[i].x.r);