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r1239: resovled #963
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@@ -695,7 +695,7 @@ Spliced alignment for short RNA-seq reads
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.B sr
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Short-read alignment without splicing
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.RB ( -k21
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.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -b0 -r100 -p.5 -N20 -f1000,5000 -n2 -m25
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.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -r100 -p.5 -N20 -f1000,5000 -n2 -m25
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.B -s40 -g100 -2K50m --heap-sort=yes
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.BR --secondary=no ).
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.TP
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