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removed duplicate check in sim2bed

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Heng Li
2026-04-25 00:35:59 -04:00
parent e5066c7976
commit d8371a403b
1 changed files with 0 additions and 3 deletions
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misc/paftools.js
-3
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@@ -2357,7 +2357,6 @@ function paf_sim2bed(args)
} }
var buf = new Bytes(); var buf = new Bytes();
var file = new File(args[0]); var file = new File(args[0]);
var seen = {};
while (file.readline(buf) >= 0) { while (file.readline(buf) >= 0) {
var line = buf.toString(); var line = buf.toString();
var t = line.split("!"); var t = line.split("!");
@@ -2378,8 +2377,6 @@ function paf_sim2bed(args)
strand = t[4]; strand = t[4];
} }
if (st > en) { var tmp = st; st = en; en = tmp; } if (st > en) { var tmp = st; st = en; en = tmp; }
if (seen[line]) continue;
seen[line] = 1;
print([chr, st, en, line, 0, strand].join("\t")); print([chr, st, en, line, 0, strand].join("\t"));
} }
file.close(); file.close();