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Author	SHA1	Message	Date
Heng Li	5caadc28b4	Merge branch 'master' into sr	2017-09-19 22:31:14 -04:00
Heng Li	56014ba3db	avoid assertion failure given 0-length reads	2017-09-19 22:30:32 -04:00
Heng Li	b99c22840f	r414: avoid assertion failure for 0-length reads	2017-09-19 22:21:27 -04:00
Heng Li	c04420698e	fixed an uninitialized value	2017-09-19 16:21:21 -04:00
Heng Li	fb1bcc0084	early exploration	2017-09-19 16:18:28 -04:00
Heng Li	11081c6c27	r411: refactored kalloc for clarity ... The new version is closer to K&R's original implementation.	2017-09-18 19:49:15 -04:00
Heng Li	60485790b4	updated version number in README	2017-09-17 20:25:54 -04:00
Heng Li	ea5a0cd17d	Release minimap2-2.2 (r409) v2.2	2017-09-17 20:08:47 -04:00
Heng Li	ffff953e2c	added python version badge	2017-09-17 17:15:55 -04:00
Heng Li	48705e9bfa	don't build for python-3.0 (unavailable in travis)	2017-09-17 17:07:42 -04:00
Heng Li	cf93e5c0a1	more functional minimap2.py; added categories	2017-09-17 17:06:39 -04:00
Heng Li	0b660c70e2	syntax error	2017-09-17 16:02:06 -04:00
Heng Li	5715c423ff	exposed timer and verbose-level to mappy	2017-09-17 15:21:36 -04:00
Heng Li	c8a019fae8	exposed fasta/q reader to mappy	2017-09-17 14:41:59 -04:00
Heng Li	e9c57f6d8b	r402: exposed kseq (for API in mappy later)	2017-09-17 13:09:16 -04:00
Heng Li	3edf2a9130	renamed mm2-lite.py to minimap2.py	2017-09-17 09:41:37 -04:00
Heng Li	89151b2588	added python 3.6 test	2017-09-17 00:55:31 -04:00
Heng Li	cc0a538bd3	try python3 in travis	2017-09-17 00:49:16 -04:00
Heng Li	e9e86f5a48	try python build again	2017-09-17 00:46:39 -04:00
Heng Li	c0779f0359	revert to the old travis ... can't get cython working...	2017-09-17 00:40:18 -04:00
Heng Li	875ea06302	install cython with travis	2017-09-17 00:37:09 -04:00
Heng Li	2c7007a11b	try again	2017-09-17 00:31:15 -04:00
Heng Li	fc87b767ba	travis for python (test)	2017-09-17 00:28:34 -04:00
Heng Li	dba8b50ee9	change python version to rc1	2017-09-17 00:08:54 -04:00
Heng Li	d5012a1b17	this is embarrassing: rename again to mappy	2017-09-17 00:05:30 -04:00
Heng Li	eaaf53c9b8	bumped version number ... due to conflict with PyPI (already uploaded)	2017-09-16 23:51:49 -04:00
Heng Li	ef46a8aed4	remaining minimap2=>mmappy in doc	2017-09-16 23:49:02 -04:00
Heng Li	28fd3d63fd	renamed module name from minimap2 to mmappy ... minimap2 clashed with minimap2 from conda	2017-09-16 23:29:41 -04:00
Heng Li	06b79c4a52	Merge branch 'master' of github.com:lh3/minimap2	2017-09-16 22:53:34 -04:00
Heng Li	8cdaae0935	fixed a few typos ... eh... a missing fix	2017-09-16 22:53:24 -04:00
Heng Li	38aa9aa9a7	eh... a missing fix	2017-09-16 22:52:52 -04:00
Heng Li	f8cb865ec5	fixed a few typos	2017-09-16 22:52:26 -04:00
Heng Li	1d90742b35	fixed hyperlink	2017-09-16 22:46:30 -04:00
Heng Li	5103cea7d3	load python README.rst into setup.py	2017-09-16 22:43:52 -04:00
Heng Li	7da9a08a6f	reformat	2017-09-16 22:36:19 -04:00
Heng Li	ddc2c6f279	change to rst for PyPI	2017-09-16 22:29:52 -04:00
Heng Li	7e98b18ba2	for python3 compatibility	2017-09-16 20:37:49 -04:00
Heng Li	3544c60c71	allow to test if index is present	2017-09-16 20:09:17 -04:00
Heng Li	6b66ec6167	minor	2017-09-16 19:55:33 -04:00
Heng Li	cb7fb77bb9	python documentation	2017-09-16 19:50:52 -04:00
Heng Li	322e5a16e5	minor tweaks to python	2017-09-16 18:11:43 -04:00
Heng Li	10bd4079d1	fixed a bug on rev strand; added example	2017-09-16 17:51:13 -04:00
Heng Li	b22703a354	improvement to the python binding	2017-09-16 11:14:01 -04:00
Heng Li	7e34bea7ab	minor	2017-09-16 09:30:00 -04:00
Heng Li	c07f9f9a49	r372: default mm_verbose to 1, and change in main	2017-09-16 09:14:34 -04:00
Heng Li	446bde214d	first python version	2017-09-16 08:44:47 -04:00
Heng Li	5966e5d6e4	make reader_open() work even if idxopt is NULL	2017-09-15 11:29:49 -04:00
Heng Li	14b853499f	r369: updated example with the latest API	2017-09-14 22:44:10 -04:00
Heng Li	75ff7ceec5	r368: API documentation	2017-09-14 22:23:04 -04:00
Heng Li	e2823d4aee	r367: index reader optionally writes index	2017-09-14 21:18:13 -04:00