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Commit Graph

Author	SHA1	Message	Date
John Marshall	260a68d232	Use #defines for CIGAR operators in C code Give the CIGAR constants names to clarify the code. So that ksw2.h remains self-contained, define KSW_* versions of the CIGAR operators it needs for use within ksw2.h. Other code should in general use the full set of MM_CIGAR_* constants in minimap.h.	2021-07-02 13:03:03 -04:00
John Marshall	177eef259d	Use the full MIDNSHP=X string whenever printing CIGAR strings Define MM_CIGAR_STR to the full string of CIGAR operators (including the 'B' operator as well) and use it throughout the C code. It would be possible to use it from the Cython code too, but it's easier to keep that as a Cython string literal to avoid adding extra runtime code to handle locale conversion.	2021-07-02 13:03:03 -04:00

Author

SHA1

Message

Date

John Marshall

260a68d232

Use #defines for CIGAR operators in C code

Give the CIGAR constants names to clarify the code. So that ksw2.h
remains self-contained, define KSW_* versions of the CIGAR operators
it needs for use within ksw2.h. Other code should in general use the
full set of MM_CIGAR_* constants in minimap.h.

2021-07-02 13:03:03 -04:00

John Marshall

177eef259d

Use the full MIDNSHP=X string whenever printing CIGAR strings

Define MM_CIGAR_STR to the full string of CIGAR operators (including
the 'B' operator as well) and use it throughout the C code.

It would be possible to use it from the Cython code too, but it's easier
to keep that as a Cython string literal to avoid adding extra runtime
code to handle locale conversion.

2021-07-02 13:03:03 -04:00