minimap2

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Commit Graph

Author	SHA1	Message	Date
John Marshall	20c104ce8d	Report errno on file opening failures and I/O errors Add the underlying operating system error (usually "No such file" or "Out of space" respectively, but highly informative when it is not) to these error messages.	2019-07-17 09:04:02 -04:00
John Marshall	371bc9513a	SAM TLEN should be 0 when either read is unmapped this_rid/this_pos will be copied from r_prev(=r_next)'s values when this read is unmapped (i.e., r is NULL). In this case, we can write RNEXT as '=' but should not calculate TLEN from these placeholder values. Similarly when the mate is unmapped (i.e., r_next is NULL). Fixes #365.	2019-04-05 09:36:46 -04:00

Author

SHA1

Message

Date

John Marshall

20c104ce8d

Report errno on file opening failures and I/O errors

Add the underlying operating system error (usually "No such file" or
"Out of space" respectively, but highly informative when it is not)
to these error messages.

2019-07-17 09:04:02 -04:00

John Marshall

371bc9513a

SAM TLEN should be 0 when either read is unmapped

this_rid/this_pos will be copied from r_prev(=r_next)'s values when this
read is unmapped (i.e., r is NULL). In this case, we can write RNEXT as
'=' but should not calculate TLEN from these placeholder values.
Similarly when the mate is unmapped (i.e., r_next is NULL).

Fixes #365.

2019-04-05 09:36:46 -04:00