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Author SHA1 Message Date
mvdbeek 1bde2cf076 Allow setting max_frag_len on a per alignment level 2018-06-19 14:39:30 -04:00
mvdbeek 31fc0f218a Allow setting max_frag_len parameter in Aligner class 2018-06-19 14:39:30 -04:00
mvdbeek 1cb0bf4bef Implement -Y for soft clipping of supp. alignments 
I tried to base this on bwa-mem and it seems to work for sam alignments.
 2017-11-09 19:22:36 +01:00