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Mikhail KolmogorovandHeng Li 704fbc6f5c An option to output SEQ field for secondary alignment (#687) 
* a new option --secondary-seq to output SEQ field for secondary alignments

* comments removed

* Fixed a conflict in #687

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Co-authored-by: Heng Li <lh3@me.com>
 2023-04-21 11:06:13 -04:00