Heng Li 8c230563cc can be compiled

2017-04-07 15:56:10 -04:00

.gitignore

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

bseq.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

bseq.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

index.c

is_hpc is a property of the index

2017-04-07 15:42:33 -04:00

kalloc.c

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

kalloc.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

kdq.h

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

khash.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kseq.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

ksort.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kthread.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kthread.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kvec.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

main.c

can be compiled

2017-04-07 15:56:10 -04:00

Makefile

can be compiled

2017-04-07 15:56:10 -04:00

map.c

can be compiled

2017-04-07 15:56:10 -04:00

minimap.h

is_hpc is a property of the index

2017-04-07 15:42:33 -04:00

misc.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

sdust.c

make sdust work (it didn't)

2017-04-07 10:45:50 -04:00

sdust.h

make sdust work (it didn't)

2017-04-07 10:45:50 -04:00

sketch.c

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

S

Description

A versatile pairwise aligner for genomic and spliced nucleotide sequences

bioinformaticsgenomicssequence-alignmentspliced-alignment

11 MiB

Languages

C 61.3%

JavaScript 16.6%

TeX 15.9%

Roff 2.9%

Cython 1.7%

Other 1.5%