Heng Li b56cd790f6 enabled kalloc (was a mistake) ...

Not using kalloc leads to significant malloc overhead.

2017-06-26 15:41:55 -04:00

.gitignore

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

align.c

r78: fixed a split bug

2017-06-26 14:45:23 -04:00

bseq.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

bseq.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

chain.c

r77: fixed an index loading bug (offset not set)

2017-06-26 13:56:25 -04:00

format.c

use long options

2017-06-26 12:31:36 -04:00

index.c

r77: fixed an index loading bug (offset not set)

2017-06-26 13:56:25 -04:00

kalloc.c

fixed a few memory leaks

2017-04-13 23:05:19 -04:00

kalloc.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

kdq.h

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

khash.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kseq.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

ksort.h

chaining

2017-05-03 20:47:29 +08:00

ksw2_extz2_sse.c

disabled dynamic banding; buggy

2017-06-25 22:43:15 -04:00

ksw2.h

backup

2017-06-23 18:57:00 -04:00

kthread.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kthread.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kvec.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

main.c

r79: drop bad hits

2017-06-26 15:28:04 -04:00

Makefile

enabled kalloc (was a mistake)

2017-06-26 15:41:55 -04:00

map.c

r79: drop bad hits

2017-06-26 15:28:04 -04:00

minimap.h

command-line option to control CIGAR output

2017-06-26 11:41:09 -04:00

misc.c

sort positions in each bucket

2017-04-12 13:31:12 -04:00

mmpriv.h

sam output

2017-06-25 22:05:20 -04:00

sdust.c

fixed memory leaks

2017-06-06 21:45:55 -04:00

sdust.h

fixed a few memory leaks

2017-04-13 23:05:19 -04:00

sketch.c

wrong HPC

2017-05-04 17:45:19 +08:00

Description

A versatile pairwise aligner for genomic and spliced nucleotide sequences

bioinformaticsgenomicssequence-alignmentspliced-alignment

11 MiB

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