Merge remote-tracking branch 'origin/master'
# Conflicts: # .idea/dataSources.xml
This commit is contained in:
fy3047957834
12
.idea/dataSources.xml
generated
12
.idea/dataSources.xml
generated
@@ -16,20 +16,12 @@
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</library>
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</libraries>
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</data-source>
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<data-source source="LOCAL" name="db [2]" uuid="fb88629d-f9e8-481d-80bf-a4bfa1c4dede">
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<data-source source="LOCAL" name="identifier.sqlite" uuid="0423d284-cfdc-4eab-acbd-e62e84ae12bb">
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<driver-ref>sqlite.xerial</driver-ref>
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<synchronize>true</synchronize>
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<jdbc-driver>org.sqlite.JDBC</jdbc-driver>
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<jdbc-url>jdbc:sqlite:C:\Users\86157\Desktop\Simple_Drawing\db.sqlite3</jdbc-url>
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<jdbc-url>jdbc:sqlite:identifier.sqlite</jdbc-url>
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<working-dir>$ProjectFileDir$</working-dir>
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<libraries>
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<library>
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<url>file://$APPLICATION_CONFIG_DIR$/jdbc-drivers/Xerial SQLiteJDBC/3.34.0/sqlite-jdbc-3.34.0.jar</url>
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</library>
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<library>
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<url>file://$APPLICATION_CONFIG_DIR$/jdbc-drivers/Xerial SQLiteJDBC/3.31.1/sqlite-jdbc-3.31.1.jar</url>
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</library>
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</libraries>
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</data-source>
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</component>
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</project>
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Before Width: | Height: | Size: 39 KiB |
@@ -131,7 +131,7 @@
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temp = $('#main_show')
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temp.empty()
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temp.append(String.raw`{% include 'tools/blast.html' %}`)
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up_file_blast()
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blast_run()
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form.render();
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}
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@@ -194,11 +194,17 @@
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temp = $('#main_show')
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temp.empty()
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temp.append(String.raw`{% include 'tools/fastqc.html' %}`)
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up_file("select_file", {})
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fastqc_run()
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form.render();
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}
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// blast
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function blast_run() {
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}
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// gen to fa
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function gen_to_fa() {
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layui.use(['upload'], function () {
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@@ -464,6 +470,39 @@
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}
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// fastqc
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function fastqc_run() {
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layui.use(['upload'], function () {
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var $ = layui.jquery
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, layer = layui.layer;
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upload.render({
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elem: '#select_fastqc'
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, url: url_up + '/tools/' + "fastqc"
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, auto: false
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, accept: 'file'
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, data: {
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csrfmiddlewaretoken: '{{ csrf_token }}',
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format: document.getElementById("format").value,
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}
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, before: function (obj) { //obj参数包含的信息，跟 choose回调完全一致，可参见上文。
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layer.load(1); //上传loading
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}
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, bindAction: '#fastqc_run'
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, done: function (res, index) {
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layer.closeAll('loading'); //关闭loading
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ab = '<a href= "' + url_up + '/chart/down?file_id=' + res.id + "&file_downlode_type=7z&ee=1" + '">' + ' <button type="button" class="layui-btn">downlode</button></a>'
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$("#down").append(ab)
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}
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, error: function (index, upload) {
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layer.closeAll('loading'); //关闭loading
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}
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})
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;
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})
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}
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</script>
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@@ -18,81 +18,21 @@
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<div class="layui-btn-container">
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<button type="button" class="layui-btn layui-btn-normal" id="select_orf">select file
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<button type="button" class="layui-btn layui-btn-normal" id="select_fastqc">select file
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</button>
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</div>
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</div>
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<div class="layui-form-item">
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<label class="layui-form-label">begin</label>
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<label class="layui-form-label">format</label>
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<div class="layui-input-inline">
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<input type="text" name="username" id="begin" lay-verify="number" placeholder="请输入"
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<input type="text" name="format" id="format" lay-verify="number" placeholder="请输入"
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autocomplete="off" class="layui-input">
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</div>
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</div>
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<div class="layui-form-item">
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<label class="layui-form-label">end</label>
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<div class="layui-input-inline">
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<input type="text" name="username" id="end" lay-verify="number" placeholder="请输入"
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autocomplete="off" class="layui-input">
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</div>
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</div>
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<div class="layui-form-item">
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<label class="layui-form-label">Cyclotype</label>
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<div class="layui-input-block">
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<input type="checkbox" id="Cyclotype" name="close" lay-skin="switch" lay-text="ON|OFF">
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</div>
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</div> <!-- 开关-默认关 -->
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<div class="layui-form-item">
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<label class="layui-form-label">Codons</label>
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<div class="layui-input-block">
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<select name="interest" id="Codons" lay-filter="aihao">
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<option value="0" selected="">0</option>
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<option value="1">1</option>
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<option value="2">2</option>
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<option value="3">3</option>
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<option value="4">4</option>
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<option value="5">5</option>
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<option value="6">6</option>
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<option value="7">7</option>
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<option value="8">8</option>
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<option value="9">9</option>
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<option value="10">10</option>
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<option value="11">11</option>
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<option value="12">12</option>
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<option value="13">13</option>
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<option value="14">14</option>
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<option value="15">15</option>
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<option value="16">16</option>
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<option value="17">17</option>
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<option value="18">18</option>
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<option value="19">19</option>
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<option value="20">20</option>
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<option value="21">21</option>
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<option value="22">22</option>
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<option value="23">23</option>
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<option value="24">24</option>
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<option value="25">25</option>
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</select>
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</div>
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</div> <!-- 单行选择框 -->
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<div class="layui-form-item">
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<label class="layui-form-label">outfmt</label>
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<div class="layui-input-block">
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<select name="interest" id="outfmt" lay-filter="aihao">
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<option value="0" selected="">0</option>
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<option value="1">1</option>
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<option value="2">2</option>
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<option value="3">3</option>
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</select>
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</div>
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</div> <!-- 单行选择框 -->
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<div class="layui-form-item">
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@@ -101,6 +101,22 @@ def pfam(request):
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return JsonResponse(data)
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def fastqc(request):
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file = request.FILES.get("file", None)
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format = request.POST.get("format", None)
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if format is None:
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format = "fastq"
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file_path, file_id = tools.path_out("chart")
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tools.keep_file(file, file_path)
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data = {"id": file_id}
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os.mkdir(f"{file_path[:-1]}")
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os.system(
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f"{tools.tools_path}/fastqc -o {file_path[:-1]} -f {format} {file_path}")
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os.system(f"7z a -t7z -r {file_id}.7z {file_path[:-1]}")
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return JsonResponse(data)
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def Differential_expression_analysis(request):
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if request.method == 'POST':
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files = request.FILES.getlist('files')
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