tools

tools/views.py

@@ -101,6 +101,22 @@ def pfam(request):
     return JsonResponse(data)
 
 
+def fastqc(request):
+    file = request.FILES.get("file", None)
+    format = request.POST.get("format", None)
+    if format is None:
+        format = "fastq"
+
+    file_path, file_id = tools.path_out("chart")
+    tools.keep_file(file, file_path)
+    data = {"id": file_id}
+    os.mkdir(f"{file_path[:-1]}")
+    os.system(
+        f"{tools.tools_path}/fastqc -o {file_path[:-1]} -f {format} {file_path}")
+    os.system(f"7z a -t7z -r {file_id}.7z {file_path[:-1]}")
+    return JsonResponse(data)
+
+
 def Differential_expression_analysis(request):
     if request.method == 'POST':
         files = request.FILES.getlist('files')