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XXAY
2021-10-08 16:38:48 +08:00
parent 21b04b906d
commit df1d865227
5 changed files with 68 additions and 66 deletions
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7
.idea/dataSources.xml generated
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@@ -16,5 +16,12 @@
</library> </library>
</libraries> </libraries>
</data-source> </data-source>
<data-source source="LOCAL" name="identifier.sqlite" uuid="0423d284-cfdc-4eab-acbd-e62e84ae12bb">
<driver-ref>sqlite.xerial</driver-ref>
<synchronize>true</synchronize>
<jdbc-driver>org.sqlite.JDBC</jdbc-driver>
<jdbc-url>jdbc:sqlite:identifier.sqlite</jdbc-url>
<working-dir>$ProjectFileDir$</working-dir>
</data-source>
</component> </component>
</project> </project>

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Time_Series_Plot.png
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43
templates/page/tools.html
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@@ -131,7 +131,7 @@
temp = $('#main_show') temp = $('#main_show')
temp.empty() temp.empty()
temp.append(String.raw`{% include 'tools/blast.html' %}`) temp.append(String.raw`{% include 'tools/blast.html' %}`)
up_file_blast() blast_run()
form.render(); form.render();
} }
@@ -194,11 +194,17 @@
temp = $('#main_show') temp = $('#main_show')
temp.empty() temp.empty()
temp.append(String.raw`{% include 'tools/fastqc.html' %}`) temp.append(String.raw`{% include 'tools/fastqc.html' %}`)
up_file("select_file", {}) fastqc_run()
form.render(); form.render();
} }
// blast
function blast_run() {
}
// gen to fa // gen to fa
function gen_to_fa() { function gen_to_fa() {
layui.use(['upload'], function () { layui.use(['upload'], function () {
@@ -464,6 +470,39 @@
} }
// fastqc
function fastqc_run() {
layui.use(['upload'], function () {
var $ = layui.jquery
, layer = layui.layer;
upload.render({
elem: '#select_fastqc'
, url: url_up + '/tools/' + "fastqc"
, auto: false
, accept: 'file'
, data: {
csrfmiddlewaretoken: '{{ csrf_token }}',
format: document.getElementById("format").value,
}
, before: function (obj) { //obj参数包含的信息，跟 choose回调完全一致，可参见上文。
layer.load(1); //上传loading
}
, bindAction: '#fastqc_run'
, done: function (res, index) {
layer.closeAll('loading'); //关闭loading
ab = '<a href= "' + url_up + '/chart/down?file_id=' + res.id + "&file_downlode_type=7z&ee=1" + '">' + ' <button type="button" class="layui-btn">downlode</button></a>'
$("#down").append(ab)
}
, error: function (index, upload) {
layer.closeAll('loading'); //关闭loading
}
})
;
})
}
</script> </script>

68
templates/tools/fastqc.html
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@@ -18,81 +18,21 @@
<div class="layui-btn-container"> <div class="layui-btn-container">
<button type="button" class="layui-btn layui-btn-normal" id="select_orf">select file <button type="button" class="layui-btn layui-btn-normal" id="select_fastqc">select file
</button> </button>
</div> </div>
</div> </div>
<div class="layui-form-item"> <div class="layui-form-item">
<label class="layui-form-label">begin</label> <label class="layui-form-label">format</label>
<div class="layui-input-inline"> <div class="layui-input-inline">
<input type="text" name="username" id="begin" lay-verify="number" placeholder="请输入" <input type="text" name="format" id="format" lay-verify="number" placeholder="请输入"
autocomplete="off" class="layui-input"> autocomplete="off" class="layui-input">
</div> </div>
</div> </div>
<div class="layui-form-item">
<label class="layui-form-label">end</label>
<div class="layui-input-inline">
<input type="text" name="username" id="end" lay-verify="number" placeholder="请输入"
autocomplete="off" class="layui-input">
</div>
</div>
<div class="layui-form-item">
<label class="layui-form-label">Cyclotype</label>
<div class="layui-input-block">
<input type="checkbox" id="Cyclotype" name="close" lay-skin="switch" lay-text="ON|OFF">
</div>
</div> <!-- 开关-默认关 -->
<div class="layui-form-item">
<label class="layui-form-label">Codons</label>
<div class="layui-input-block">
<select name="interest" id="Codons" lay-filter="aihao">
<option value="0" selected="">0</option>
<option value="1">1</option>
<option value="2">2</option>
<option value="3">3</option>
<option value="4">4</option>
<option value="5">5</option>
<option value="6">6</option>
<option value="7">7</option>
<option value="8">8</option>
<option value="9">9</option>
<option value="10">10</option>
<option value="11">11</option>
<option value="12">12</option>
<option value="13">13</option>
<option value="14">14</option>
<option value="15">15</option>
<option value="16">16</option>
<option value="17">17</option>
<option value="18">18</option>
<option value="19">19</option>
<option value="20">20</option>
<option value="21">21</option>
<option value="22">22</option>
<option value="23">23</option>
<option value="24">24</option>
<option value="25">25</option>
</select>
</div>
</div> <!-- 单行选择框 -->
<div class="layui-form-item">
<label class="layui-form-label">outfmt</label>
<div class="layui-input-block">
<select name="interest" id="outfmt" lay-filter="aihao">
<option value="0" selected="">0</option>
<option value="1">1</option>
<option value="2">2</option>
<option value="3">3</option>
</select>
</div>
</div> <!-- 单行选择框 -->
<div class="layui-form-item"> <div class="layui-form-item">

16
tools/views.py
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@@ -101,6 +101,22 @@ def pfam(request):
return JsonResponse(data) return JsonResponse(data)
def fastqc(request):
file = request.FILES.get("file", None)
format = request.POST.get("format", None)
if format is None:
format = "fastq"
file_path, file_id = tools.path_out("chart")
tools.keep_file(file, file_path)
data = {"id": file_id}
os.mkdir(f"{file_path[:-1]}")
os.system(
f"{tools.tools_path}/fastqc -o {file_path[:-1]} -f {format} {file_path}")
os.system(f"7z a -t7z -r {file_id}.7z {file_path[:-1]}")
return JsonResponse(data)
def Differential_expression_analysis(request): def Differential_expression_analysis(request):
if request.method == 'POST': if request.method == 'POST':
files = request.FILES.getlist('files') files = request.FILES.getlist('files')