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r187: reversed round in clear_opt()

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Heng Li
2020-04-03 22:19:55 -04:00
parent 76de054331
commit 18b69f1a72
3 changed files with 6 additions and 6 deletions
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Assembly.cpp
+2 -2
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@@ -1315,14 +1315,14 @@ int ha_assemble(void)
// error correction
assert(asm_opt.number_of_round > 0);
for (r = 0; r < asm_opt.number_of_round; ++r) {
clear_opt(&asm_opt, asm_opt.number_of_round - r); // this update asm_opt.roundID and a few other fields
clear_opt(&asm_opt, r); // this update asm_opt.roundID and a few other fields
ha_overlap_and_correct(r);
fprintf(stderr, "[M::%s::%.3f*%.2f] ==> corrected reads for round %d\n", __func__, yak_realtime(), yak_cputime() / yak_realtime(), r + 1);
}
Output_corrected_reads();
fprintf(stderr, "[M::%s::%.3f*%.2f] ==> written corrected reads to disk\n", __func__, yak_realtime(), yak_cputime() / yak_realtime());
// overlap between corrected reads
clear_opt(&asm_opt, 0);
clear_opt(&asm_opt, asm_opt.number_of_round);
ha_overlap_final();
fprintf(stderr, "[M::%s::%.3f*%.2f] ==> found overlaps for the final round\n", __func__, yak_realtime(), yak_cputime() / yak_realtime());
ha_ft_destroy(ha_flt_tab);