xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-28 10:48:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r199: renamed pre.ovlp.bin to pre.ec.bin

Browse Source 
Also updated the Makefile dependencies
This commit is contained in:
Heng Li
2020-04-05 13:45:50 -04:00
parent 0f1994fc1f
commit 46f83e152d
3 changed files with 44 additions and 13 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.cpp
+11 -12
View File
@@ -13688,26 +13688,25 @@ void write_ma_hit_ts(ma_hit_t_alloc* x, long long n_read, char* read_file_name)
fprintf(stderr, "ma_hit_ts has been written.\n");
}
void write_all_data_to_disk(ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources,
All_reads *RNF, char* output_file_name)
void write_all_data_to_disk(ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, All_reads *RNF, char* output_file_name)
{
char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.ovlp", output_file_name);
write_All_reads(RNF, gfa_name);
sprintf(gfa_name, "%s.ovlp.source", output_file_name);
write_ma_hit_ts(sources, RNF->total_reads, gfa_name);
char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.ec", output_file_name);
write_All_reads(RNF, gfa_name);
sprintf(gfa_name, "%s.ovlp.reverse", output_file_name);
write_ma_hit_ts(reverse_sources, RNF->total_reads, gfa_name);
sprintf(gfa_name, "%s.ovlp.source", output_file_name);
write_ma_hit_ts(sources, RNF->total_reads, gfa_name);
free(gfa_name);
sprintf(gfa_name, "%s.ovlp.reverse", output_file_name);
write_ma_hit_ts(reverse_sources, RNF->total_reads, gfa_name);
free(gfa_name);
}
int load_all_data_from_disk(ma_hit_t_alloc **sources, ma_hit_t_alloc **reverse_sources, char* output_file_name)
{
char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.ovlp", output_file_name);
sprintf(gfa_name, "%s.ec", output_file_name);
if (!load_All_reads(&R_INF, gfa_name)) {
free(gfa_name);
return 0;