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large extension
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@@ -1324,6 +1324,10 @@ void inline resize_UC_Read(UC_Read *z, int64_t s)
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}
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}
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}
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}
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void update_sketch_trace(overlap_region_alloc* ol, const ul_idx_t *uref, const ug_opt_t *uopt,
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All_reads *rref, UC_Read* tu, asg64_v* idx, asg64_v *b0, asg64_v *b1, int64_t ql, int64_t wl, kv_ul_ov_t *aln, uint64_t rid);
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#define copy_asg_arr(des, src) ((des).a = (src).a, (des).n = (src).n, (des).m = (src).m)
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#define FORWARD_KSW 0
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#define FORWARD_KSW 0
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#define BACKWARD_KSW 1
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#define BACKWARD_KSW 1
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