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chhylp123
2020-06-27 12:06:59 -04:00
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README.md
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@@ -45,7 +45,7 @@ directly and quickly. This might be helpful when you want to get an optimized
assembly by multiple rounds of experiments with different parameters. assembly by multiple rounds of experiments with different parameters.
Hifiasm is a standalone and lightweight assembler, which does not need external Hifiasm is a standalone and lightweight assembler, which does not need external
libraries (except zlib). For large genomes, it can generate high-quality libraries (except zlib). For large genomes, it can generate high-quality primary
assembly in a few hours. Hifiasm has been tested on various large and complex datasets. assembly in a few hours. Hifiasm has been tested on various large and complex datasets.
The results are as follows: The results are as follows:
@@ -56,8 +56,9 @@ The results are as follows:
|<sub>[\[Strawberry\]](https://www.ncbi.nlm.nih.gov/sra/?term=SRR11606867)<sub>|<sub>0.8Gb<sub>|<sub>x36<sub>|<sub>-t48 -D10<sub>|<sub>152.7h<sub>|<sub>3.7h<sub>|<sub>91G<sub>|<sub>17.8Mb<sub>| |<sub>[\[Strawberry\]](https://www.ncbi.nlm.nih.gov/sra/?term=SRR11606867)<sub>|<sub>0.8Gb<sub>|<sub>x36<sub>|<sub>-t48 -D10<sub>|<sub>152.7h<sub>|<sub>3.7h<sub>|<sub>91G<sub>|<sub>17.8Mb<sub>|
|<sub>[\[Mountain yellow-legged frog\]](https://www.ncbi.nlm.nih.gov/sra?term=(SRR11606868)%20OR%20SRR12048570)<sub>|<sub>9.0Gb<sub>|<sub>x29<sub>|<sub>-t48<sub>|<sub>2834.3h<sub>|<sub>69.0h<sub>|<sub>463G<sub>|<sub>9.3Mb<sub>| |<sub>[\[Mountain yellow-legged frog\]](https://www.ncbi.nlm.nih.gov/sra?term=(SRR11606868)%20OR%20SRR12048570)<sub>|<sub>9.0Gb<sub>|<sub>x29<sub>|<sub>-t48<sub>|<sub>2834.3h<sub>|<sub>69.0h<sub>|<sub>463G<sub>|<sub>9.3Mb<sub>|
|<sub>[\[Redwood\]](https://www.ncbi.nlm.nih.gov/sra/?term=SRP251156)<sub>|<sub>26.5Gb<sub>|<sub>x28<sub>|<sub>-t64<sub>|<sub>3890.3h<sub>|<sub>65.5h<sub>|<sub>699G<sub>|<sub>5.4Mb<sub>| |<sub>[\[Redwood\]](https://www.ncbi.nlm.nih.gov/sra/?term=SRP251156)<sub>|<sub>26.5Gb<sub>|<sub>x28<sub>|<sub>-t64<sub>|<sub>3890.3h<sub>|<sub>65.5h<sub>|<sub>699G<sub>|<sub>5.4Mb<sub>|
|<sub>[\[CHM13\]](https://www.ncbi.nlm.nih.gov/sra?term=(((SRR11292120)%20OR%20SRR11292121)%20OR%20SRR11292122)%20OR%20SRR11292123)<sub>|<sub>3.1Gb<sub>|<sub>x32<sub>|<sub>-t48 -l0<sub>|<sub>310.7h<sub>|<sub>8.2h<sub>|<sub>114.0G<sub>|<sub>88.1Mb<sub>| |<sub>[\[CHM13\]](https://www.ncbi.nlm.nih.gov/sra?term=(((SRR11292120)%20OR%20SRR11292121)%20OR%20SRR11292122)%20OR%20SRR11292123)<sub>|<sub>3.1Gb<sub>|<sub>x32<sub>|<sub>-t48 -l0<sub>|<sub>310.7h<sub>|<sub>8.2h<sub>|<sub>114G<sub>|<sub>88.1Mb<sub>|
|<sub>[\[HG00733\]](https://www.ebi.ac.uk/ena/data/view/ERX3831682)<sub>|<sub>3.1Gb<sub>|<sub>x33<sub>|<sub>-t48<sub>|<sub>269.1h<sub>|<sub>6.9h<sub>|<sub>135G<sub>|<sub>70.0Mb<sub>|
|<sub>[\[HG002\]](https://www.ncbi.nlm.nih.gov/sra?term=(((SRR10382244)%20OR%20SRR10382245)%20OR%20SRR10382248)%20OR%20SRR10382249)<sub>|<sub>3.1Gb<sub>|<sub>x36<sub>|<sub>-t48<sub>|<sub>305.4h<sub>|<sub>7.7h<sub>|<sub>137G<sub>|<sub>98.7Mb<sub>|