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Accelerate overlap merge

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This commit is contained in:
Haoyu Cheng
2019-05-18 11:36:42 -04:00
parent ddd96d8456
commit 63509bcb7f
5 changed files with 221 additions and 6 deletions
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Hash_Table.h
+9
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@@ -41,6 +41,8 @@ typedef struct
{
k_mer_pos* list;
uint64_t length;
uint8_t direction;
uint64_t end_pos;
} k_mer_pos_list;
typedef struct
@@ -339,6 +341,13 @@ void destory_Candidates_list(Candidates_list* l);
void merge_Candidates_list(Candidates_list* l, k_mer_pos* n_list, uint64_t n_lengh, uint64_t end_pos, int strand);
void init_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list);
void destory_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list);
void clear_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list);
void append_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list, k_mer_pos* n_list, uint64_t n_length,
uint64_t n_end_pos, uint8_t n_direction);
void merge_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list, Candidates_list* candidates);