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fix insertion bug

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This commit is contained in:
Haoyu Cheng
2019-07-18 03:02:58 -04:00
parent ad8a4c9c65
commit 6802d873cf
8 changed files with 989 additions and 523 deletions
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Correct.h
+6 -3
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@@ -5,10 +5,12 @@
#include "Levenshtein_distance.h"
#include "POA.h"
#define CORRECT_THRESHOLD 0.6
#define CORRECT_THRESHOLD 0.65
#define MIN_COVERAGE_THRESHOLD 4
#define CORRECT_INDEL_LENGTH 2
#define MISMATCH 1
#define INSERTION 2
#define DELETION 3
#define MAX(x, y) ((x >= y)?x:y)
#define MIN(x, y) ((x <= y)?x:y)
@@ -47,6 +49,7 @@ void pre_filter_by_nearby(k_mer_pos* new_n_list, k_mer_pos* old_n_list, uint64_t
All_reads* R_INF, Correct_dumy* dumy, uint64_t* new_n_length);
void pre_filter_by_nearby_single(k_mer_pos* new_n_list, k_mer_pos* old_n_list, uint64_t n_length, uint64_t n_end_pos, UC_Read* g_read,
All_reads* R_INF, Correct_dumy* dumy, uint64_t* new_n_length);
void get_seq_from_Graph(Graph* backbone, Correct_dumy* dumy);
/**********************for prefilter************************ */
void destory_k_mer_pos_list_alloc_prefilter(k_mer_pos_list_alloc* list);