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Haoyu Cheng 6802d873cf fix insertion bug
2019-07-18 03:02:58 -04:00
.vscode
fix insertion bug
2019-07-18 03:02:58 -04:00
Assembly.cpp
fix insertion bug
2019-07-18 03:02:58 -04:00
Assembly.h
Merge overlap
2019-05-18 01:03:24 -04:00
CommandLines.cpp
fix insertion bug
2019-07-18 03:02:58 -04:00
CommandLines.h
S/L index&reads
2019-05-16 21:14:50 -04:00
Correct.cpp
fix insertion bug
2019-07-18 03:02:58 -04:00
Correct.h
fix insertion bug
2019-07-18 03:02:58 -04:00
edlib.cpp
edit distance based error correction
2019-07-07 03:44:59 -04:00
edlib.h
edit distance based error correction
2019-07-07 03:44:59 -04:00
Hash_Table.cpp
resure alignment
2019-07-12 10:18:25 -04:00
Hash_Table.h
fix insertion bug
2019-07-18 03:02:58 -04:00
ketopt.h
Using klib
2019-05-10 16:14:01 -04:00
khash.h
S/L index&reads
2019-05-16 21:14:50 -04:00
kmer.cpp
Reduce memory requirement
2019-05-16 00:22:20 -04:00
kmer.h
Merge overlap
2019-05-18 01:03:24 -04:00
kseq.h
Update position hash table
2019-05-14 17:02:03 -04:00
Levenshtein_distance.cpp
prefilter
2019-07-08 01:06:36 -04:00
Levenshtein_distance.h
resure alignment
2019-07-12 10:18:25 -04:00
LICENSE
Initial commit
2019-05-09 15:34:58 -04:00
main.cpp
resure alignment
2019-07-12 10:18:25 -04:00
Makefile
full error correction
2019-07-14 21:13:50 -04:00
Output.cpp
full error correction
2019-07-14 21:13:50 -04:00
Output.h
full error correction
2019-07-14 21:13:50 -04:00
POA.cpp
fix insertion bug
2019-07-18 03:02:58 -04:00
POA.h
fix insertion bug
2019-07-18 03:02:58 -04:00
Process_Read.cpp
edit distance based error correction
2019-07-07 03:44:59 -04:00
Process_Read.h
edit distance based error correction
2019-07-07 03:44:59 -04:00
README.md
test README
2019-05-09 16:05:32 -04:00

README.md

Long_read_assembly

##test

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Description
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
bioinformaticsdenovo-assemblygenomicshifi-readpacbio
Readme MIT 21 MiB
Languages
C++ 93.2%
C 6.5%
Roff 0.2%