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fix type in README

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chhylp123
2020-08-27 23:57:48 -04:00
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README.md
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@@ -8,7 +8,7 @@ cd hifiasm && make
# Run on test data (use -f0 for small datasets) # Run on test data (use -f0 for small datasets)
wget https://github.com/chhylp123/hifiasm/releases/download/v0.7/chr11-2M.fa.gz wget https://github.com/chhylp123/hifiasm/releases/download/v0.7/chr11-2M.fa.gz
./hifiasm -o test -t4 -f0 chr11-2M.fa.gz 2> test.log ./hifiasm -o test -t4 -f0 chr11-2M.fa.gz 2> test.log
awk '/^S/{print ">"$1;print $2}' test.p_ctg.gfa > test.p_ctg.fa # get primary contigs in FASTA awk '/^S/{print ">"$2;print $3}' test.p_ctg.gfa > test.p_ctg.fa # get primary contigs in FASTA
# Assemble inbred/homozygous genomes (-l0 disables duplication purging) # Assemble inbred/homozygous genomes (-l0 disables duplication purging)
hifiasm -o CHM13.asm -t32 -l0 CHM13-HiFi.fa.gz 2> CHM13.asm.log hifiasm -o CHM13.asm -t32 -l0 CHM13-HiFi.fa.gz 2> CHM13.asm.log