xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-08 07:08:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

update README

Browse Source
This commit is contained in:
chhylp123
2023-04-06 23:16:59 -04:00
parent 5df5892f33
commit 7e855ba5e2
1 changed files with 3 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files
README.md
+3
View File
@@ -22,6 +22,9 @@ hifiasm -o HG002.asm --h1 read1.fq.gz --h2 read2.fq.gz HG002-HiFi.fq.gz
yak count -b37 -t16 -o pat.yak <(cat pat_1.fq.gz pat_2.fq.gz) <(cat pat_1.fq.gz pat_2.fq.gz) yak count -b37 -t16 -o pat.yak <(cat pat_1.fq.gz pat_2.fq.gz) <(cat pat_1.fq.gz pat_2.fq.gz)
yak count -b37 -t16 -o mat.yak <(cat mat_1.fq.gz mat_2.fq.gz) <(cat mat_1.fq.gz mat_2.fq.gz) yak count -b37 -t16 -o mat.yak <(cat mat_1.fq.gz mat_2.fq.gz) <(cat mat_1.fq.gz mat_2.fq.gz)
hifiasm -o HG002.asm -t32 -1 pat.yak -2 mat.yak HG002-HiFi.fa.gz hifiasm -o HG002.asm -t32 -1 pat.yak -2 mat.yak HG002-HiFi.fa.gz
# Single-sample telomere-to-telomere assembly with HiFi, ultralong and Hi-C reads
hifiasm -o HG002.asm --h1 read1.fq.gz --h2 read2.fq.gz --ul ul.fq.gz HG002-HiFi.fq.gz
``` ```
See [tutorial][tutorial] for more details. See [tutorial][tutorial] for more details.