edit distance based error correction

2026-10-08 10:48:13 +08:00 · 2019-07-07 03:44:59 -04:00
parent b553f3ac5e
commit 87873d6323
35 changed files with 3910 additions and 6 deletions
@@ -0,0 +1,27 @@
+#ifndef __CORRECT__
+#define __CORRECT__
+#include <stdint.h>
+#include "Hash_Table.h"
+
+#define WINDOW 350
+#define THRESHOLD  15
+
+typedef struct
+{
+    uint64_t* overlapID;
+    uint64_t length;
+    uint64_t lengthNT;
+    uint64_t size;
+    uint64_t start_i;
+    char overlap_region[WINDOW + THRESHOLD*2 + 10];
+} Correct_dumy;
+
+
+void correct_overlap(overlap_region_alloc* overlap_list, All_reads* R_INF, UC_Read* g_read, Correct_dumy* dumy);
+
+void init_Correct_dumy(Correct_dumy* list);
+void destory_Correct_dumy(Correct_dumy* list);
+void clear_Correct_dumy(Correct_dumy* list, overlap_region_alloc* overlap_list);
+
+
+#endif