xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-02 09:18:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

r206: apply trio binning when loading from binary

Browse Source
This commit is contained in:
Heng Li
2020-04-06 16:58:29 -04:00
parent 1bbca54d8d
commit a79fd0f360
2 changed files with 4 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Assembly.cpp
+3 -1
View File
@@ -1156,6 +1156,7 @@ int ha_assemble(void)
if (asm_opt.load_index_from_disk && load_all_data_from_disk(&R_INF.paf, &R_INF.reverse_paf, asm_opt.output_file_name)) {
ovlp_loaded = 1;
fprintf(stderr, "[M::%s::%.3f*%.2f] ==> loaded corrected reads and overlaps from disk\n", __func__, yak_realtime(), yak_cpu_usage());
trio_partition();
}
if (!ovlp_loaded) {
// construct hash table for high occurrence k-mers
@@ -1189,6 +1190,7 @@ int ha_assemble(void)
build_string_graph_without_clean(asm_opt.min_overlap_coverage, R_INF.paf, R_INF.reverse_paf,
R_INF.total_reads, R_INF.read_length, asm_opt.min_overlap_Len, asm_opt.max_hang_Len, asm_opt.clean_round,
asm_opt.gap_fuzz, asm_opt.min_drop_rate, asm_opt.max_drop_rate, asm_opt.output_file_name, asm_opt.large_pop_bubble_size, 0, !ovlp_loaded);
///destory_All_reads(&R_INF);
if (asm_opt.verbose_gfa) R_INF.paf = R_INF.reverse_paf = 0; // with --dbg-gfa, R_INF.paf and R_INF.reverse_paf are freed in load_debug_graph()
destory_All_reads(&R_INF);
return 0;
}
CommandLines.h
+1 -1
View File
@@ -3,7 +3,7 @@
#include <pthread.h>
#define HA_VERSION "0.3.0-dirty-r205"
#define HA_VERSION "0.3.0-dirty-r206"
#define VERBOSE 0