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Haoyu Cheng
2019-12-26 15:49:32 -05:00
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README.md
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@@ -13,10 +13,10 @@ Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hif
Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). For large genomes, it can generate high-quality assembly in a few hours. Hifiasm has been tested on the following datasets:
|Dataset |GSize | Cov | Asm options |CPU time|Wall time| RAM|unitig/contig N50<sup>1</sup>|
|Dataset |GSize | Cov | Asm options |CPU time|Wall time| RAM|unitig/contig N50<sup>[1]</sup>|
|:---------------|-----:|-----:|:---------------------|-------:|--------:|----:|----------------:|
|[Human NA12878] | 3Gb|x28 |-k 40 -t 42 -r 2 | 200h| 5h32m|?114G| 93.5Kb/18.6Mb|
|[Human HG002] | 3Gb|x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m|?122G| 320kb/29Mb|
|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| NA/39.8Mb|
|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16G| NA/7.5Mb|
|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| NA<sup>[2]</sup>/39.8Mb|
|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16G| NA<sup>[3]</sup>/7.5Mb|