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final DP-based assembly

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Haoyu Cheng
2019-11-13 20:18:11 -05:00
parent d6c6a1fa11
commit ada03ea388
22 changed files with 19432 additions and 1178 deletions
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Makefile
+1 -1
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@@ -3,7 +3,7 @@ CC=g++
CFLAGS = -w -c -msse4.2 -mpopcnt -fomit-frame-pointer -Winline -O3 -lz
LDFLAGS = -lm -lz -lpthread -O3 -mpopcnt -msse4.2 -lz -w
SOURCES = main.cpp Output.cpp CommandLines.cpp Process_Read.cpp Assembly.cpp kmer.cpp Hash_Table.cpp POA.cpp Correct.cpp Levenshtein_distance.cpp edlib.cpp
SOURCES = main.cpp Output.cpp CommandLines.cpp Process_Read.cpp Assembly.cpp kmer.cpp Hash_Table.cpp POA.cpp Correct.cpp Levenshtein_distance.cpp edlib.cpp Overlaps.cpp
OBJECTS = $(SOURCES:.c=.o)
EXECUTABLE = ccs_assembly