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Haoyu Cheng ada03ea388 final DP-based assembly
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.vscode
final DP-based assembly
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Assembly.cpp
final DP-based assembly
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Assembly.h
phasing
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CommandLines.cpp
final DP-based assembly
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CommandLines.h
final DP-based assembly
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Correct.cpp
final DP-based assembly
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Correct.h
final DP-based assembly
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debug_assembly.sh
phasing
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edlib.cpp
edit distance based error correction
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edlib.h
edit distance based error correction
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Hash_Table.cpp
final DP-based assembly
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Hash_Table.h
final DP-based assembly
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kdq.h
final DP-based assembly
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ketopt.h
Using klib
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khash.h
final DP-based assembly
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kmer.cpp
final DP-based assembly
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kmer.h
final DP-based assembly
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kseq.h
Update position hash table
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ksort.h
final DP-based assembly
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kvec.h
final DP-based assembly
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Levenshtein_distance.cpp
prefilter
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Levenshtein_distance.h
resure alignment
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LICENSE
Initial commit
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main.cpp
final DP-based assembly
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Makefile
final DP-based assembly
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Output.cpp
full error correction
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Output.h
full error correction
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Overlaps.cpp
final DP-based assembly
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Overlaps.h
final DP-based assembly
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POA.cpp
final DP-based assembly
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POA.h
final DP-based assembly
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Process_Read.cpp
final DP-based assembly
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Process_Read.h
final DP-based assembly
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README.md
test README
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sort_fasta.sh
phasing
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README.md

Long_read_assembly

##test

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Description
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
bioinformaticsdenovo-assemblygenomicshifi-readpacbio
Readme MIT 21 MiB
Languages
C++ 93.2%
C 6.5%
Roff 0.2%