xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-09 04:58:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

final DP-based assembly

Browse Source
This commit is contained in:
Haoyu Cheng
2019-11-13 20:18:11 -05:00
parent d6c6a1fa11
commit ada03ea388
22 changed files with 19432 additions and 1178 deletions
Download Patch File Download Diff File Expand all files Collapse all files
kmer.h
+19
View File
@@ -21,6 +21,25 @@ typedef struct
} Hash_code;
typedef struct {
Hash_code key; ///k-mer itself
uint64_t value; ///offset
} k_v;
typedef struct {
k_v* buffer;
uint32_t size;
uint32_t length;
} small_hash_table;
void init_small_hash_table(small_hash_table* x);
void clear_small_hash_table(small_hash_table* x);
void resize_small_hash_table(small_hash_table* x, uint64_t size);
void destory_small_hash_table(small_hash_table* x);
void add_small_hash_table(small_hash_table* x, k_v* element);
void sort_small_hash_table(small_hash_table* x);
int compare_k_mer(k_v* x, k_v* y);
int query_small_hash_table(small_hash_table* target, k_v* query, long long* l_end, long long* r_end);
typedef struct