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final DP-based assembly

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This commit is contained in:
Haoyu Cheng
2019-11-13 20:18:11 -05:00
parent d6c6a1fa11
commit ada03ea388
22 changed files with 19432 additions and 1178 deletions
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main.cpp
+13 -8
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@@ -200,12 +200,6 @@ int main(int argc, char *argv[])
if (!CommandLine_process(argc, argv))
return 1;
/**
debug_edit_distance();
return 1;
**/
fprintf(stdout, "Will perform %d round of error correction...\n", number_of_round);
fprintf(stdout, "defined k_mer_min_freq by user: %d\n", k_mer_min_freq);
@@ -213,10 +207,21 @@ int main(int argc, char *argv[])
fprintf(stdout, "k-mer length: %d\n",k_mer_length);
fprintf(stdout, "coverage: %d\n",coverage);
fprintf(stdout, "read_graph: %d\n", read_graph);
fprintf(stdout, "adapterLen: %d\n", adapterLen);
fflush(stdout);
if(required_read_name)
{
fprintf(stdout, "required_read_name: %s\n", required_read_name);
}
Correct_Reads(number_of_round);
return 1;
}